PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00235.1.g00110.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 89aa    MW: 9996.61 Da    PI: 10.8295
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00235.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.54.7e-301059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+lye+ss
  Zpz_sc00235.1.g00110.1.sm.mkhc 10 RIDNSTTRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYEFSS 59
                                    8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-33276IPR002100Transcription factor, MADS-box
CDDcd002651.91E-43276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRGKIVLRR IDNSTTRQVT FSKRRNGLLK KAKELSILCD AEVGLIVFSS TGRLYEFSST  60
NMKAVIDRYA KAKEEQVGVN NATSELMVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-22182182Myocyte-specific enhancer factor 2B
1tqe_Q4e-22182182Myocyte-specific enhancer factor 2B
1tqe_R4e-22182182Myocyte-specific enhancer factor 2B
1tqe_S4e-22182182Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123681e-73DQ512368.1 Triticum aestivum MADS-box transcription factor TaAGL17 (AGL17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646201.12e-52PREDICTED: MADS-box transcription factor 57-like
RefseqXP_012703484.19e-51PREDICTED: MADS-box transcription factor 57-like
RefseqXP_012703481.19e-51PREDICTED: MADS-box transcription factor 57-like
SwissprotQ6Z6W22e-48MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLW5G9P21e-49W5G9P2_WHEAT; Uncharacterized protein
STRINGSb04g028960.11e-52(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-42AGAMOUS-like 16